setup mu2e setup mu2efiletools
Continuing with example 1 from the generate_fcl page
cd /mu2e/data/users/`whoami`/fclds/20161121-pions (for dir in ???; do ls $dir/*.fcl.json; done) | mu2eFileDeclare
As soon as the content of a json file is stored
in SAM, the file is deleted. This makes it easy to
re-start the registration if it was interrupted for any reason.
If you get an error about HTTPS_KEY_FILE, run
the kx509 command, as the error message suggests. If you
get an error from kx509, you may need to open an new
shell (on the same machine) with clean environment (e.g. no Offline
setup) and run kx509 there. Then retry the mu2eFileDeclare command.
For small scale job submissions generated fcl files can be left on
the /mu2e/data bluearc disk where they were generated.
However it is easy to overload the system when trying to run too
many jobs with files coming off a bluearc disk. Normally one should
upload fcl datasets to a /pnfs disk, which can handle higher loads.
Any Mu2e user can put a dataset into
the /pnfs/mu2e/scratch area. "Disposable" fcl datasets
should be uploaded there by using the --scratch option
to mu2eFileUpload, see below. If a better bookkeeping
is desired, fcl files should be uploaded into the persistent /pnfs
area using the --disk option and registered
in SAM. If you want to use persistent fcl storage,
ask Mu2eDataAdmin
to create a directory
/pnfs/mu2e/persistent/datasets/usr-etc/cnf/your-username
and give you the ownership to it.
Continuing with the example,
(for dir in ???; do ls $dir/*.fcl; done) | mu2eFileUpload --scratch
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